PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA12G00223
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 333aa    MW: 36077.7 Da    PI: 9.3357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA12G00223genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.4e-074363525
                --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                +C++f   G+C++Gd+C F+H
  AA12G00223 43 PCNNFITKGFCHRGDSCLFSH 63
                7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.624111IPR000571Zinc finger, CCCH-type
SMARTSM003560.00291339IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.9721337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0193866IPR000571Zinc finger, CCCH-type
SMARTSM003561.14165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-74274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-44365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
GEKCKFSHDT TPLTKSMPCC YFATQSCMKG DDCAYDHDLS KYPCNNFITK GFCHRGDSCL  60
FSHKETPQSA SDALHSKDKP NATSSTNITA TSFSFGVSPQ KTNKQTVREA IARLPTIQAR  120
VSIPGPVAFL NPSSQSNERT SSELVTPPQI PPFRKPPMAP KGLSFLSSDK TIDKNTTKPQ  180
ASSFVQNLCS PGTTTANSDD QNLKQMQQRH SLPPVPPKGI SFVSFASDVC SGSMTQKPSD  240
EHQAVADQEP MLTQEVTVSK NLKVTTNSHI QSSLVSAMKL AAKLESGKSE RGMKKPAAVN  300
KLDVNVSVAK SGNISSKILE FLSSFSHDNK RQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401265.11e-119hypothetical protein EUTSA_v10012834mg
SwissprotQ9LTS71e-117C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLV4LS751e-119V4LS75_EUTSA; Uncharacterized protein
STRINGAT5G56930.11e-115(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121601516