PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA12G00223

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C3H

Protein Properties

Length: 333aa MW: 36077.7 Da PI: 9.3357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA12G00223	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.4e-07	43	63	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f G+C++Gd+C F+H AA12G00223 43 PCNNFITKGFCHRGDSCLFSH 63 7******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.624	1	11	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0029	13	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.972	13	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.019	38	66	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1	41	65	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-7	42	74	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-4	43	65	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
GEKCKFSHDT TPLTKSMPCC YFATQSCMKG DDCAYDHDLS KYPCNNFITK GFCHRGDSCL 60 FSHKETPQSA SDALHSKDKP NATSSTNITA TSFSFGVSPQ KTNKQTVREA IARLPTIQAR 120 VSIPGPVAFL NPSSQSNERT SSELVTPPQI PPFRKPPMAP KGLSFLSSDK TIDKNTTKPQ 180 ASSFVQNLCS PGTTTANSDD QNLKQMQQRH SLPPVPPKGI SFVSFASDVC SGSMTQKPSD 240 EHQAVADQEP MLTQEVTVSK NLKVTTNSHI QSSLVSAMKL AAKLESGKSE RGMKKPAAVN 300 KLDVNVSVAK SGNISSKILE FLSSFSHDNK RQN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401265.1	1e-119	hypothetical protein EUTSA_v10012834mg
Swissprot	Q9LTS7	1e-117	C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBL	V4LS75	1e-119	V4LS75_EUTSA; Uncharacterized protein
STRING	AT5G56930.1	1e-115	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12160	15	16